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A list of all the posts and pages found on the site. For you robots out there is an XML version available for digesting as well.
Pages
About me
About me
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Posts
Future Blog Post
Published:
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Blog Post number 4
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 3
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 2
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 1
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
conference
patents
Systems and methods for measuring similarity between mass spectra and peptides
Published:
Systems and methods for measuring cross-modal similarity between mass spectra and peptides are provided.
Recommended citation: Saeed, F., & Tariq, M. U. (2022). "Systems and methods for measuring similarity between mass spectra and peptides." IU.S. Patent No. 11,251,031. Washington, DC: U.S. Patent and Trademark Office.. https://patents.google.com/patent/US11251031B1/en
portfolio
Portfolio item number 1
Short description of portfolio item number 1
Portfolio item number 2
Short description of portfolio item number 2
publications
Power-efficient and highly scalable parallel graph sampling using fpgas
Published in IEEE, 2017
This paper presents an OpenCL implementation of parallel graph sampling on FPGAs
Recommended citation: Tariq, U., Cheema, U. I., & Saeed, F. (2017, December). "Power-efficient and highly scalable parallel graph sampling using fpgas." International Conference on ReConFigurable Computing and FPGAs (ReConFig) (pp. 1-6). IEEE. https://ieeexplore.ieee.org/abstract/document/8279806
Methods for Proteogenomics Data Analysis, Challenges, and Scalability Bottlenecks: A Survey
Published in IEEE Access, 2020
This paper surveys the computational tools for proteogenomic analysis using mass-spectrometry data
Recommended citation: Tariq, M. U., Haseeb, M., Aledhari, M., Razzak, R., Parizi, R. M., & Saeed, F. (2020). "Methods for proteogenomics data analysis, challenges, and scalability bottlenecks: a survey." IEEE Access. 9, 5497-5516 https://ieeexplore.ieee.org/abstract/document/9309010
SpeCollate: Deep cross-modal similarity network for mass spectrometry data based peptide deductions
Published in PloS one, 2021
SpeCollate is the first of its kind deep learning based peptide database search engine. By embedding both the query spectra and the database peptides using a dual encoder network, SpeCollate can efficiently rank high quality peptides for each query spectrum providing up to 95% search accuracy.
Recommended citation: Tariq, M. U., & Saeed, F. (2021). "SpeCollate: Deep cross-modal similarity network for mass spectrometry data based peptide deductions." PloS one. 16(10), e0259349. https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0259349
Graph Theoretic Approach for the Analysis of Comprehensive Mass-Spectrometry (MS/MS) Data of Dissolved Organic Matter
Published in IEEE, 2021
This paper presents a graph based algorithm for generating all possible fragmentation pathways or organic molecules from a given mass-spectrum
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Unsupervised structural classification of dissolved organic matter based on fragmentation pathways
Published in Environmental Science & Technology, 2022
Structural clustering of isomeric families of organic molecules.
Recommended citation: Leyva, D., Tariq, M. U., Jaffé, R., Saeed, F., & Lima, F. F. (2022). "Unsupervised structural classification of dissolved organic matter based on fragmentation pathways.." Environmental Science & Technology. 56(2), 1458-1468. https://pubs.acs.org/doi/abs/10.1021/acs.est.1c04726
Molecular level characterization of DOM along a freshwater-to-estuarine coastal gradient in the Florida Everglades
Published in Aquatic Sciences, 2022
Understanding the dissolved organic matter (DOM) export to ocean and compositional variability
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talks
Talk 1 on Relevant Topic in Your Field
Published:
This is a description of your talk, which is a markdown files that can be all markdown-ified like any other post. Yay markdown!
Conference Proceeding talk 3 on Relevant Topic in Your Field
Published:
This is a description of your conference proceedings talk, note the different field in type. You can put anything in this field.
teaching
Teaching experience 1
Undergraduate course, University 1, Department, 2014
This is a description of a teaching experience. You can use markdown like any other post.
Teaching experience 2
Workshop, University 1, Department, 2015
This is a description of a teaching experience. You can use markdown like any other post.